PYTHON FOR BIOINFORMATICS

ONCOLOGY 778

Become familiar with bioinformatics theory and principles. Provides real-world experience that can be applied to your own work. Provides a foundation of knowledge that can be used to critically evaluate existing bioinformatics tools that can be used in your work, and in the absence of an appropriate tool, identify the analyses that demand the development of novel tools.

ABT 775

Using a variety of existing and emerging bioinformatics tools and computational methods, emphasizes hands-on experiences analyzing and interpreting large data sets (e.g. genomic, proteomic, microbiomics, interactome, target discovery). Evaluate and adapt existing computational approaches for specific use in solving a problem in biotechnology.

ABT 780

Advances the development of competencies promoting efficient analysis of biological data. Emphasizes matching a research problem with the most effective tools for its completion, balancing use of existing software and de novo software development. Advanced aspects of Python and R, algorithmics, machine learning, simulations, and effective communication of results are emphasized.

MICROBIO 357

Provides foundational introduction to bioinformatics for microbiologists. Emphasis on the basic understanding of bioinformatics tools, analysis, and databases and their applications (e.g. Sequence alignment, Phylogenetic trees, Genome analyses). Topics include: command line manipulation, sequence alignment, file formats, phylogenetic trees, standard genome and protein databases, interpretation of microbial and viral genomes, and basic scientific computer programming.

ABT 785

Exploration and application of existing bioinformatic tools. Implementation of pre-coded solutions to data acquisition, wrangling, analysis, visualization, and structural modeling problems. Complete a project that generates a multi-system workflow to solve bioinformatic problems.