GENERAL BIOINFORMATICS FOR MICROBIOLOGISTS

MICROBIO 657

Provides a practical and fundamental introduction to sequence-based analysis focused on microbial systems. Emphasis on gaining a basic understanding of the principles of both classical and newer algorithms useful for bioinformatic analysis. Topics include: BLAST; RNA-seq analysis; transcriptional binding prediction; genome sequence assembly, analysis and annotation; and comparative genomics. Note that this course requires that each student have access to a laptop that runs a linux/unix Operating System such as a Mac or a ChromeBook. PC Laptops running a VM are also acceptable. No prior knowledge of computational biology is required.

MICROBIO 470

Examines modern microbial genetics and molecular processes. Emphasis on the use of eubacterial and eukaryotic microbes to elucidate cellular function. Discussion of experimental approaches to study microbes and their use in biotechnology, bioremediation, and medicine.

ONCOLOGY 778

Become familiar with bioinformatics theory and principles. Provides real-world experience that can be applied to your own work. Provides a foundation of knowledge that can be used to critically evaluate existing bioinformatics tools that can be used in your work, and in the absence of an appropriate tool, identify the analyses that demand the development of novel tools.

MICROBIO 303

Basic biology of microorganisms, including structure, function, physiology, genetics, ecology, diversity, and evolution.

ABT 730

Introduce diverse strategies for computational analysis of macromolecular data using Python including sequence alignment, genome annotation, data retrieval from databases, phylogenetic analysis, and molecular evolution. Experiential learning is emphasized; confidence in practical skills is developed through persistent application of course content to projects focused on current problems in bioinformatic research.