ADVANCED BIOINFORMATICS

BMI/COMPSCI 775

Introduces networks as a powerful representation in many real-world domains including biology and biomedicine. Encompasses theory and applications of networks, also referred to as graphs, to study complex systems such as living organisms. Surveys the current literature on computational, graph-theoretic approaches that use network algorithms for biological modeling, analysis, interpretation, and discovery. Enables hands-on experience in network biology by implementing computational projects.

ABT 780

Advances the development of competencies promoting efficient analysis of biological data. Emphasizes matching a research problem with the most effective tools for its completion, balancing use of existing software and de novo software development. Advanced aspects of Python and R, algorithmics, machine learning, simulations, and effective communication of results are emphasized.

BMI/COMPSCI 576

Algorithms for computational problems in molecular biology. Studies algorithms for problems such as: genome sequencing and mapping, pairwise and multiple sequence alignment, modeling sequence classes and features, phylogenetic tree construction, and gene-expression data analysis.

ONCOLOGY 778

Become familiar with bioinformatics theory and principles. Provides real-world experience that can be applied to your own work. Provides a foundation of knowledge that can be used to critically evaluate existing bioinformatics tools that can be used in your work, and in the absence of an appropriate tool, identify the analyses that demand the development of novel tools.

ABT 730

Introduce diverse strategies for computational analysis of macromolecular data using Python including sequence alignment, genome annotation, data retrieval from databases, phylogenetic analysis, and molecular evolution. Experiential learning is emphasized; confidence in practical skills is developed through persistent application of course content to projects focused on current problems in bioinformatic research.